Segmentation of the proximal femur in radial MR scans using a random forest classifier and deformable model registration

Damapoulos, Dimitrios (University of Bern, Bern ,Switzerland) ; Lerch, Till Dominic (University of Bern, Bern, Switzerland) ; Schmaranzer, Florian (University of Bern, Bern, Switzerland) ; Tannast, Moritz (University of Bern, Bern, Switzerland) ; Chênes, Christophe (Geneva School of Health Sciences, HES-SO University of Applied Sciences and Arts Western Switzerland) ; Zheng, Guoyan (University of Bern, Bern, Switzerland) ; Schmid, Jérôme (Geneva School of Health Sciences, HES-SO University of Applied Sciences and Arts Western Switzerland)

Background : Radial 2D MRI scans of the hip are routinely used for the diagnosis of the cam type of femoroacetabular impingement (FAI) and of avascular necrosis (AVN) of the femoral head, both considered causes of hip joint osteoarthritis in young and active patients. A method for automated and accurate segmentation of the proximal femur from radial MRI scans could be very useful in both clinical routine and biomechanical studies. However, to our knowledge, no such method has been published before. Purpose : The aims of this study are the development of a system for the segmentation of the proximal femur from radial MRI scans and the reconstruction of its 3D model that can be used for diagnosis and planning of hip-preserving surgery. Methods : The proposed system relies on: (a) a random forest classifier and (b) the registration of a 3D template mesh of the femur to the radial slices based on a physically based deformable model. The input to the system are the radial slices and the manually specified positions of three landmarks. Our dataset consists of the radial MRI scans of 25 patients symptomatic of FAI or AVN and accompanying manual segmentation of the femur, treated as the ground truth. Results : The achieved segmentation of the proximal femur has an average Dice similarity coefficient (DSC) of 96.37 ± 1.55%, an average symmetric mean absolute distance (SMAD) of 0.94 ± 0.39 mm and an average Hausdorff distance of 2.37 ± 1.14 mm. In the femoral head subregion, the average SMAD is 0.64 ± 0.18 mm and the average Hausdorff distance is 1.41 ± 0.56 mm. Conclusions : We validated a semiautomated method for the segmentation of the proximal femur from radial MR scans. A 3D model of the proximal femur is also reconstructed, which can be used for the planning of hip-preserving surgery.


Keywords:
Article Type:
scientifique
Faculty:
Santé
School:
HEdS - Genève
Institute:
Aucun institut
Date:
2019-03
Pagination:
17 p.
Published in:
International Journal of Computer Assisted Radiology and Surgery
Numeration (vol. no.):
2019, vol. 14, no. 3, pp. 545-561
DOI:
ISSN:
1861-6410
Appears in Collection:

Note: The file is under embargo until: 2020-04-30


 Record created 2019-09-09, last modified 2019-09-10

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